BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB013G03LP1|AL426574
(865 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 899 0.0
3x_Contig706 622 e-178
>3x_Contig1687
Length = 12800
Score = 899 bits (449), Expect = 0.0
Identities = 460/469 (98%)
Strand = Plus / Minus
Query: 397 atmatttacggttcttaagttttcggtctgtttaacatttcgcaacttttcaatttttca 456
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12800 ataatttacggttcttaagttttcggtctgtttaacatttcgcaacttttcaatttttca 12741
Query: 457 atattgaaagttgaagcgattcttaatacggcattattcccctatmattcacagagtgat 516
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12740 atattgaaagttgaagcgattcttaatacggcattattcccctataattcacagagtgat 12681
Query: 517 tcagtgaaagamgaagggaccaacagaactgcgagagagataaavvvvmaaggaccttta 576
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 12680 tcagtgaaagaagaagggaccaacagaactgcgagagagataaaaaaaaaaggaccttta 12621
Query: 577 cacaatggggtttgttcaagttgccatattgaattcaaaagtactaacagaccatttgta 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12620 cacaatggggtttgttcaagttgccatattgaattcaaaagtactaacagaccatttgta 12561
Query: 637 aatgggaatacagtgtgcccatttaggtcactgccaggtacaggaaagacaagaagcatt 696
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 12560 aatgggaatacagtgtgcccatttaggtcactgcaaggtacaggaaagacaagaagcatt 12501
Query: 697 tcagtacgaacacgcattcgaacataatacggagaaaaattaagagttctgtttactgat 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12500 tcagtacgaacacgcattcgaacataatacggagaaaaattaagagttctgtttactgat 12441
Query: 757 acatctggccgacgcatgtggacgtggttacagcggcacaatggcagaagaatttctgtc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12440 acatctggccgacgcatgtggacgtggttacagcggcacaatggcagaagaatttctgtc 12381
Query: 817 ctgacccaggaaccgtctggcactgcagcatctgacaaaagtcagaatc 865
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12380 ctgacccaggaaccgtctggcactgcagcatctgacaaaagtcagaatc 12332
>3x_Contig706
Length = 2070
Score = 622 bits (311), Expect = e-178
Identities = 337/347 (97%), Gaps = 1/347 (0%)
Strand = Plus / Minus
Query: 1 gatcccagagaacacctcgatgcccatgcacgtcgatcaacttcaaaaagaaagtattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gatcccagagaacacctcgatgcccatgcacgtcgatcaacttcaaaaagaaagtattac 308
Query: 61 caacgatatcgtccaccaatgcaatggncaccagataagccagtataaacccatttctct 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 307 caacgatatcgtccaccaatgcaatgg-caccagataagccagtataaacccatttctct 249
Query: 121 ggattagggtatgcmatgtataacctagcgatagtmacatctatvatcttgttagaagcc 180
|||||||||||||| ||||||||||||||||||| |||||||| ||||||| || |||
Sbjct: 248 ggattagggtatgcactgtataacctagcgatagtaacatctatcctcttgttcgacgcc 189
Query: 181 ttgggcaaagcatgtttaaccttttctttctcagcagaattcaagcctcccatagtatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttgggcaaagcatgtttaaccttttctttctcagcagaattcaagcctcccatagtatac 129
Query: 241 tcggaaacaactgctttatgattattaatttctcaaaagaagtgtaaactcgttcaactt 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 128 tcggaaacaactgctttatgattataaatttctcaaaagaagtgtaaactcgttcaactt 69
Query: 301 gaaatcaattcttgacggaggcagctaccgatgggttctaatgavaa 347
|||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 68 gaaatcaattcttgacggaggcagctaccgatgggttctaatgaaaa 22
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.712 1.32
Gapped
Lambda K H
1.39 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5660
Number of Sequences: 1807
Number of extensions: 5660
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 865
length of database: 10,358,551
effective HSP length: 16
effective length of query: 849
effective length of database: 10,329,639
effective search space: 8769863511
effective search space used: 8769863511
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.6 bits)